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10X Genomics 10x drop seq platform
10x Drop Seq Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/10x+drop-seq+platform/drop+seq/pm37013458-104-26-29
Average 86 stars, based on 1 article reviews
10x drop seq platform - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Infection:

Article Title: Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice.
Article Snippet: .. The core data supporting these claims was obtained by drop let-based scRNA-Seq analysis (10X Genomics platform) of TG from uninfected C57BL/6 mice (dataset: “Uninf-1”) and two biological replicate groups of C57BL/6 mice infected via the corneal route with 2 × 105 plaque-forming units/eye of HSV-1 strain McKrae 35 days earlier (datasets: “Inf-1” and “Inf-2”). ..

other:

Article Title: Single-cell RNA sequencing in ovarian cancer: revealing new perspectives in the tumor microenvironment
Article Snippet: Of these, the Drop-seq-based platform from 10X Genomics and the CytoSeq-based platform from BD Rhapsody have emerged as the most prominent and widely used commercial platforms.

Article Title: Comparison of spatial transcriptomics technologies using tumor cryosections
Article Snippet: The snRNA-seq data were sourced from ref. [ ] and obtained using the Chromium drop-seq platform with the 3′-Single Cell RNA-sequencing v2 kit (10x Genomics).

Article Title: Enhancing sensitivity and versatility of Tn5-based single cell omics
Article Snippet: A typical coverage in scATAC-seq experiments with the Chromium drop-seq platform from 10x Genomics is 7,000 accessible sites per cell out of >100,000 sites that are detected by (pseudo-)bulk ATACseq (Li et al., 2021).

RNA Sequencing:

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia.
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. snRNA-seq data preprocessing Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger Nature Communications | (2025) 16:2626 17 v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE. ..

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. .. Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE.

Functional Assay:

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia.
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. snRNA-seq data preprocessing Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger Nature Communications | (2025) 16:2626 17 v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE. ..

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. .. Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE.

RNA sequencing:

Article Title: Comparison of spatial transcriptomics technologies using tumor cryosections.
Article Snippet: Cryosections of 10 μm thickness were obtained using a Cryostar NX50 (Epredia) cryostat at a cutting temperature of −15 °C for all technologies. .. Subsequent storage and processing were carried out in accordance with the standard protocols provided for each workflow, as detailed below. snRNA‐seq The snRNA-seq data were sourced from ref. [52] and obtained using the Chromium drop-seq platform with the 3′-Single Cell RNA-sequencing v2 kit (10x Genomics). ..

FACS:

Article Title: Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling in male mice
Article Snippet: .. In brief, live, nucleated, singlet cells (DAPI - DRAQ5 + ) were sorted on a BD FACS Aria Fusion into HBSS + 10% FBS prior to droplet encapsulation using 10x Genomics’ Drop-seq platform (Chromium v2). .. 4 pooled samples of 4 mice each were generated (two HC pools, two CSD pools) and run on the same 10x Chromium chip, though 1 CSD sample was lost due to errors with droplet encapsulation; libraries were sequenced on Illumina NextSeq 550 and feature counts generated using Cellranger V2 pipeline.

Encapsulation:

Article Title: Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling in male mice
Article Snippet: .. In brief, live, nucleated, singlet cells (DAPI - DRAQ5 + ) were sorted on a BD FACS Aria Fusion into HBSS + 10% FBS prior to droplet encapsulation using 10x Genomics’ Drop-seq platform (Chromium v2). .. 4 pooled samples of 4 mice each were generated (two HC pools, two CSD pools) and run on the same 10x Chromium chip, though 1 CSD sample was lost due to errors with droplet encapsulation; libraries were sequenced on Illumina NextSeq 550 and feature counts generated using Cellranger V2 pipeline.



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Image Search Results


Single cell datasets of normal mammary and tumour cells.

Journal: Seminars in Cell & Developmental Biology

Article Title: Mammary gland development from a single cell ‘omics view

doi: 10.1016/j.semcdb.2021.03.013

Figure Lengend Snippet: Single cell datasets of normal mammary and tumour cells.

Article Snippet: Murrow et al. bioRxiv 2020 (preprint v4) , Gartner , Human , Normal , Mammary cells isolated from 28x premenopausal women of varying BMI and age , Both , Live (DAPI - ) cells were sorted using CD31 - /CD45 - /EpCAM +/- / CD49f +/- and CD45 + , scRNA-seq using Chromium 10x Drop-Seq platform , 87,793 cells.

Techniques: Sequencing, Isolation, In Situ, Dissection, Staining, Methylation Sequencing, Derivative Assay, Mass Cytometry, Magnetic Cell Separation, In Vitro, Cell Culture

Summary of nomenclature of adult mammary epithelial cell subtypes.

Journal: Seminars in Cell & Developmental Biology

Article Title: Mammary gland development from a single cell ‘omics view

doi: 10.1016/j.semcdb.2021.03.013

Figure Lengend Snippet: Summary of nomenclature of adult mammary epithelial cell subtypes.

Article Snippet: Murrow et al. bioRxiv 2020 (preprint v4) , Gartner , Human , Normal , Mammary cells isolated from 28x premenopausal women of varying BMI and age , Both , Live (DAPI - ) cells were sorted using CD31 - /CD45 - /EpCAM +/- / CD49f +/- and CD45 + , scRNA-seq using Chromium 10x Drop-Seq platform , 87,793 cells.

Techniques: Mass Cytometry